[XtalOpt-devel] problem initiating Xtalopt on Ubuntu

Wei Lai laiwei at msu.edu
Mon Jun 18 08:44:34 PDT 2012


Dear Users,

I was able to install Xtalopt on 32-bit Ubuntu 12.04 and see the Xtalopt
GUI. When I was going through the TiO2 tutorial and pressed "Begin", it
seems that the structures couldn't be initiated and Xtalopt simply was
hanging up at "Waitg for structures to initialize (0 of 5)". I am copying
the screen message as the following:

"Avogadro version: 1.1.0 Git: e982c89
LibAvogadro version: 1.1.0 Git: e982c89"
Locale:  "en_US"
Libavogadro translations not found.
System has OpenGL support.
About to test OpenGL capabilities.
OpenGL capabilities found:
Double Buffering.
 Direct Rendering.
Antialiasing.
void DBusMenuExporterPrivate::addAction(QAction*, int): Already tracking
action "" under id 61
void DBusMenuExporterPrivate::addAction(QAction*, int): Already tracking
action "" under id 62
Loading plugins: "/home/wl/bin/../lib/avogadro/1_1"
Searching for plugins in "/home/wl/lib/avogadro/1_1"
Searching for plugins in "/home/wl/lib/avogadro/1_1/colors"
Searching for plugins in "/home/wl/lib/avogadro/1_1/engines"
Searching for plugins in "/home/wl/lib/avogadro/1_1/extensions"
Searching for plugins in "/home/wl/lib/avogadro/1_1/tools"
Searching for plugins in "/home/wl/lib/avogadro/1_1/contrib"
Loading plugins: "/home/wl/.avogadro/1_1/plugins"
Settings are missing for the next engines: ("Ball and Stick", "Axes",
"Cartoon", "Dipole", "Force", "Hydrogen Bond", "Label", "Overlay",
"Polygon", "QTAIM", "Ribbon", "Ring", "Simple Wireframe", "Van der Waals
Spheres", "Stick", "Surfaces", "Wireframe")
QStackedLayout::setCurrentWidget: Widget 0x94e0f60 not contained in stack
dev warning: Extension "GAMESS" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
dev warning: Extension "Orbitals" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
dev warning: Extension "Vibration" is using a deprecated DockWidget loading
method. See Extension::dockWidgets() documentation.
PreCalculate
Finished queue.
GLWidget initialisation...
GLWidget initialised...
createObjects()
libpng warning: Ignoring attempt to set cHRM RGB triangle with zero area
x1 and x2 cannot be equal. Centering around point.
y1 and y2 cannot be equal. Centering around point.
Debug:  "Starting optimization."
QObject::moveToThread: Current thread (0x8fdec48) is not the object's
thread (0x9115378).
Cannot move to target thread (0x8e5b2f8)

New structure accepted ( "1x1" )
QObject::moveToThread: Current thread (0x8fdec48) is not the object's
thread (0x9115378).
Cannot move to target thread (0x8e5b2f8)

New structure accepted ( "1x2" )
QObject::moveToThread: Current thread (0x8fdec48) is not the object's
thread (0x9115378).
Cannot move to target thread (0x8e5b2f8)

New structure accepted ( "1x3" )
QObject::moveToThread: Current thread (0x8fdec48) is not the object's
thread (0x9115378).
Cannot move to target thread (0x8e5b2f8)

New structure accepted ( "1x4" )
QObject::moveToThread: Current thread (0x8fdec48) is not the object's
thread (0x9115378).
Cannot move to target thread (0x8e5b2f8)

New structure accepted ( "1x5" )


Thanks.

Regards, Wei
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