[XtalOpt-devel] compiling xtalopt on mac os x 10.6.8 (Sebastien Hamel)

[David Lonie]

Glad to hear it compiled. If it seems like there is a problem in
XtalOpt that is causing the submission problem, let me know and I'll
see what I can find out.

Thanks,

Dave

On Thu, Sep 29, 2011 at 2:42 PM, Sebastien Hamel <hamel2 at llnl.gov> wrote:
> Compilation on mac succesful after the modification to libssh.
>
> But having the same problem submitting to batch from the mac that I have
> submitting while running locally on the large linux from our cluster.
>
> On 9/29/11 11:16 AM, "xtalopt-devel-request at lists.openmolecules.net"
> <xtalopt-devel-request at lists.openmolecules.net> wrote:
>
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>>Today's Topics:
>>
>>   1. compiling xtalopt on mac os x 10.6.8 (Sebastien Hamel)
>>   2. Re: compiling xtalopt on mac os x 10.6.8 (David Lonie)
>>
>>
>>----------------------------------------------------------------------
>>
>>Message: 1
>>Date: Thu, 29 Sep 2011 09:40:07 -0700
>>From: Sebastien Hamel <hamel2 at llnl.gov>
>>To: <xtalopt-devel at lists.openmolecules.net>
>>Subject: [XtalOpt-devel] compiling xtalopt on mac os x 10.6.8
>>Message-ID: <CAA9ED77.3E45%hamel2 at llnl.gov>
>>Content-Type: text/plain; charset="us-ascii"
>>
>>Hello,
>>
>>I installed eigen,cmake,qt,openbabel,avogadro (removed the reference to
>>bsdyengine,navigatetool and element in avogadro_LIB_DEPENDS) . Now I'm try
>>to make xtalopt but I get this error message:
>>
>>Undefined symbols:
>>  "_environ", referenced from:
>>      _ssh_execute_command in libssh_static.a(socket.c.o)
>>ld: symbol(s) not found
>>collect2: ld returned 1 exit status
>>make[2]: *** [src/xtalopt/xtalopt.dylib] Error 1
>>make[1]: *** [src/xtalopt/CMakeFiles/xtalopt.dir/all] Error 2
>>make: *** [all] Error 2
>>
>>
>>It looks like libssh is looking for something. This error message pops up
>>for different mac installation (if you simply google the error message).
>>
>>Has anybody succesfully installed on a mac?
>>
>>Sebastien
>>
>>
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>>------------------------------
>>
>>Message: 2
>>Date: Thu, 29 Sep 2011 12:47:55 -0400
>>From: David Lonie <loniedavid at gmail.com>
>>To: Sebastien Hamel <hamel2 at llnl.gov>
>>Cc: xtalopt-devel at lists.openmolecules.net
>>Subject: Re: [XtalOpt-devel] compiling xtalopt on mac os x 10.6.8
>>Message-ID:
>>       <CABzw8w_x5Hkngzy8y5gwfa9Pqa0H_Sk9xLR8CkHj6OSOS_-y-A at mail.gmail.com>
>>Content-Type: text/plain; charset=ISO-8859-1
>>
>>Hi Sebastien,
>>
>>Unfortunately libssh does not support OSX, and as a result, XtalOpt is
>>aimed at Linux/Windows users only.
>>
>>However, I did find this:
>>
>>http://www.fireantsecurity.co.uk/?p=131
>>
>>it seems to suggest that changing line 697 in xtalopt/src/libssh/socket.c
>>from
>>
>>execve(args[0],(char * const *)args,(char * const *)environ);
>>
>>to
>>
>>execvp(args[0],(char * const *)args);
>>
>>will enable libssh to compile on OSX. I don't have a mac to try this
>>on, but if it works for you I can add the change to the source code.
>>
>>Dave
>>
>>On Thu, Sep 29, 2011 at 12:40 PM, Sebastien Hamel <hamel2 at llnl.gov> wrote:
>>> Hello,
>>> I installed eigen,cmake,qt,openbabel,avogadro (removed the reference to
>>> bsdyengine,navigatetool and element in avogadro_LIB_DEPENDS) . Now I'm
>>>try
>>> to make xtalopt but I get this error message:
>>> Undefined symbols:
>>> ? "_environ", referenced from:
>>> ? ? ? _ssh_execute_command in libssh_static.a(socket.c.o)
>>> ld: symbol(s) not found
>>> collect2: ld returned 1 exit status
>>> make[2]: *** [src/xtalopt/xtalopt.dylib] Error 1
>>> make[1]: *** [src/xtalopt/CMakeFiles/xtalopt.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>> It looks like libssh is looking for something. This error message pops
>>>up
>>> for different mac installation (if you simply google the error message).
>>> Has anybody succesfully installed on a mac?
>>> Sebastien
>>> _______________________________________________
>>> XtalOpt-Devel mailing list
>>> XtalOpt-Devel at lists.openmolecules.net
>>>
>>>http://lists.openmolecules.net/listinfo.cgi/xtalopt-devel-openmolecules.n
>>>et
>>>
>>>
>>
>>
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>>End of XtalOpt-Devel Digest, Vol 14, Issue 2
>>********************************************
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